Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCSVVASNLAQCLTYLRN---GG-------------AVPPACCKGVGTLNNAAKTTQDRRDACNCIKTTAAQLG--G-VN-------SNYAAALPGLCHVNIPYKISTSTNCASIK
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44712 for 414 contacts (-108.0/contact) +
2D Compatibility (PS) -6478 + (NN) -982 + (LL) 1888
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -55434.0 ( -133.90 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: