Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPLPPCTVIVNQLNPCVPFLTRNVATPSQTCCGGVRYLANYSSSKGDRISICQCIEGSQSMF-PLIDFSLISNLPASCSVPITLPKITPTFDCSTV
1N89 Chain:A ((5-65))
----------SQLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40232 for 376 contacts (-107.0/contact) +
2D Compatibility (PS) -5849 + (NN) -313 + (LL) 1280
1D Compatibility (HY) -800 + (ID) 700
Total energy: -46614.0 ( -123.97 by residue)
QMean score : 0.139
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: