Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------ALGCGSVIS---YLGSCRPYVTDK--------------GPLGGCCSGVKGLYKAAKTTADRQATCSCLKTLASTYKGVN-----LSKAAGLPQQCGVNIPYKISPSTDCSKVT
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46927 for 505 contacts (-92.9/contact) +
2D Compatibility (PS) -7347 + (NN) 722 + (LL) 1256
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -59196.0 ( -117.22 by residue)
QMean score : 0.167
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: