Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGEVTSGLAPCLPYLEG----RG---P----------------LGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK--G-I-------DTGKAAGLPGVCGVNIPYKISPSTDCSTVQ
1PSY Chain:A ((25-117))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26934 for 439 contacts (-61.4/contact) +
2D Compatibility (PS) -5853 + (NN) 17 + (LL) 1348
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -36722.0 ( -83.65 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: