Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GGVVEICNVSKDDLMPCKPAVT----Q--PPAQ-------PVQACCSVLSTANLTCFCEFGNNYPSL----LRMF-G----IDPDLAKALPGECKLNSPPGC
2LVF Chain:A ((16-105))
-----------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24450 for 385 contacts (-63.5/contact) +
2D Compatibility (PS) -6843 + (NN) -852 + (LL) 524
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -35221.0 ( -91.48 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: