Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSICNVSISGLTSCSPAVTPPNPAPPTSACCSALSHA--DLRCLCSYKNSTLL----PSLGID-----QKLPLKLPEKCRLPHRAPC
3OB4 Chain:A ((428-488))
--------------------------QERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13369 for 263 contacts (-50.8/contact) +
2D Compatibility (PS) -5165 + (NN) -3090 + (LL) 280
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -23544.0 ( -89.52 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: