Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-VTCS--PVQLSSCVSAITSSTP-PSNLCCSKIKEQRPCLCQYMKNPN------------LRKF--VNTPNARKVANTCGTPFP-------RC----
1FK5 Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNA----ARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1FK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15620 for 360 contacts (-43.4/contact) +
2D Compatibility (PS) -6444 + (NN) -768 + (LL) 444
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -26338.0 ( -73.16 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1FK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FK5-query.scw
PDB file :
Tito_Scwrl_1FK5.pdb
: