Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EDCSNAMD--KLAPCTSAVGL----SSNG----VKP-----------SSECCDALKGTSTSCVCKSVR----------------------AVISLPAKCNLPALTCSGSR
1PSY Chain:A ((16-120))
QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCMR--
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14420 for 429 contacts (-33.6/contact) +
2D Compatibility (PS) -6475 + (NN) -2801 + (LL) 252
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -28094.0 ( -65.49 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: