Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQAT--NKDCICNALR---------------------AATTFTTSCNLP-SLDC
3OB4 Chain:A ((429-488))
---------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17690 for 190 contacts (-93.1/contact) +
2D Compatibility (PS) -3701 + (NN) 35 + (LL) 1236
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -24270.0 ( -127.74 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: