Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQAT--NKDCICNALR---------------------AATTFTTTCNLP-SLDC
3OB4 Chain:A ((429-488))
---------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17721 for 190 contacts (-93.3/contact) +
2D Compatibility (PS) -3681 + (NN) 123 + (LL) 1236
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -24193.0 ( -127.33 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: