Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVA--LKLAPCAKAAQDPGAR-----------------PPAACCAAVRDIGTHQSHACLCAVLLSSTVR---RS-G--V---KPEVAITIPKRCKLANRPVGYKCGGLMTTYDGLV
1W2Q Chain:A ((16-117))
--------CERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME--NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--APQRC------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31711 for 480 contacts (-66.1/contact) +
2D Compatibility (PS) -7646 + (NN) -1275 + (LL) 424
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -44408.0 ( -92.52 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: