Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHDIEKEAEKLAPCTKAAQYLEAPVSKRCCTVMEKKLKN--------PDCLCAIMFSHTARSA-GVNPEVAVTIPKRCNIPVR-P--VGHKCGAFPLV
1T12 Chain:A ((2-89))
------ITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTC--LKS-AAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSK----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26485 for 521 contacts (-50.8/contact) +
2D Compatibility (PS) -7962 + (NN) -4466 + (LL) 484
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -42079.0 ( -80.77 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: