Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRTPIRSAAA--SLSPCLGAAGNAKA---------------------KVPPACCSKVAALLKTTPKCLCAILLSPL----------AKQAGIKPGIAIGIPKRCNIRNRQAGKKCGN
1PSY Chain:A ((16-116))
------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35773 for 466 contacts (-76.8/contact) +
2D Compatibility (PS) -6750 + (NN) -34 + (LL) 496
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -44261.0 ( -94.98 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: