Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RECVPQLN--RLLACRAYLAAP---GAA----AAAP-----------SAECCGALAGISRECACSTMA----------------------IINSIPSRCGVSQVNCTASSTST
1PSY Chain:A ((16-121))
QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCMRQ----
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45134 for 430 contacts (-105.0/contact) +
2D Compatibility (PS) -6488 + (NN) -778 + (LL) 332
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -58118.0 ( -135.16 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: