Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSDVCTVVSP------VLESC-YIALQSGESFM---KSESVCCKSLEILENRIRDSDHQFTRYAVCECFKASDNDKQVLVNENLLE-VQVLCGPHVPYPITSYSDCLQYADEEIARTAL
3D6W Chain:A ((1-109))
GKSVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTHSTFLLSMDN---GERVPVSQSYASYFRKLLGF-------
General information:
TITO was launched using:
RESULT:
Template:
3D6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28609 for 637 contacts (-44.9/contact) +
2D Compatibility (PS) -10265 + (NN) 1767 + (LL) 1348
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -37959.0 ( -59.59 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_3D6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6W-query.scw
PDB file :
Tito_Scwrl_3D6W.pdb
: