Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDATLDCDSQVNG--LAGNCMTAVLI---GTK-------------PSSKCCKFVRSAQLDCLCPKITKDVTKMIT-----ER----LLSTALKIAKQCNWELPHNYQCGSYTFP
1SM7 Chain:A ((3-103))
-----QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49320 for 519 contacts (-95.0/contact) +
2D Compatibility (PS) -7112 + (NN) -261 + (LL) 172
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -59471.0 ( -114.59 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: