Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCTFESTLP--DLADCRPYVSTGSTQ--------TDP-----------TAACCSELRNVGHSCLCDLLRD--------TKVP-S--DIDINRAVALPGKCSLPGADSCS
1PSY Chain:A ((17-116))
---QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20403 for 426 contacts (-47.9/contact) +
2D Compatibility (PS) -7243 + (NN) -3310 + (LL) 8
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -36448.0 ( -85.56 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: