Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGCRGDFRN--LAAQCMPYVQKP---GPKT----PP------SKGCCNAVRTVDVPCACQHLPPGVGGTV--------SLEK----VAFVLRVCGKPLKPGTKCGSYTVPPAV
1SM7 Chain:A ((4-103))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42805 for 502 contacts (-85.3/contact) +
2D Compatibility (PS) -7053 + (NN) 956 + (LL) 484
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -50318.0 ( -100.24 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: