Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCPQVQLTVVPCLGYLRNPGPSVPAPCCNGLRGLNNQAKTTPERQSVCRCLKTTAQSL----SGLN-----VPALATLPKKCGVNLPYKISTAIDCNTVKY
3OB4 Chain:A ((427-485))
------------------------HQERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP--------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13355 for 265 contacts (-50.4/contact) +
2D Compatibility (PS) -5066 + (NN) -327 + (LL) 2304
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -19144.0 ( -72.24 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: