Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MIVWYELTLFGVLTHIISNVFFPSESDYLST--IKFLGSFAVGFGFRPLGAFIFGYIGDKYGRRKVLLTSVILVSISSTAIAVIPDFKEIGILSPILLLLCRIVQGTAAGGETSINSAFLIEHSSDKKDLGFLGSMKAFSGALGSITCFLMIAIVKKFTGENYEIWGWRLLFYFCSIMGVIGFLTRYI-MEESLAYKTHDQNKSLSNSPFLELIRSYKKAFMIAIGLGIAQNAIVYSAIMFYNISVKELILSGIDIKNVVRITVEITFGTSAVLFAILSDKVGRKNVMVLILIALACAGLPAFSLLSYDNHYIVTLTFLLISIPIGASFGIYNSLVCELLPTKVRCTGFSLAHNISAGIFGGISPSICMWLIEKTETELAAGFYLTMCALISLIYVLQIKTEDKKVDW |
| 2GFP Chain:A ((9-383)) | LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTV--------LIAASAMQGMGTGVGGVMARTLPRDLYERTQ--------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFI-----LPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFP--LATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -264279 for 3248 contacts (-81.4/contact) +
2D Compatibility (PS) -36398 + (NN) 5355 + (LL) 2640
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -307382.0 ( -94.64 by residue)
QMean score : 0.129
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