Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MQVVEIVIRN----STYKISCESGKKDHLLHLANSFNKLVSSISHKTGGKGSDTLNFLLAALILEDKVLELTKKLDEINQKRENYKNEKRTEYTEVLDRVNKIIECIKD
1PRT Chain:D ((1-110))
DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAA-SSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFL-----GPKQLTFEGKPALELIRMVECSGKQ-DCP--
General information:
TITO was launched using:
RESULT:
Template:
1PRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1599 for 616 contacts (2.6/contact) +
2D Compatibility (PS) -10124 + (NN) 934 + (LL) 840
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -11851.0 ( -19.24 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_1PRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PRT-query.scw
PDB file :
Tito_Scwrl_1PRT.pdb
: