Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MSLSPAIFSIGPVSIHWYSLAYVLGIVFAYWHLHKLDEQKIFTKNFYD--SLLTATI------IGIILGGRLGFVLIYDPISYI-NNPIEILKTWKGGMSF----HGGAIGVLCAVIISCRRYNIPIFYTLDLISCGVPI-GLFLGRIGNFVNGELFGRVTTMP----WGMVFPESGDNLLRHPSQLYEAFFEGLLFFAIANSLFFLTRIRLYHGTLTGIAVIWYGT------VRFVVEF------FREPDYQVGYLWLDLTMGQ---LLSIFMTLLGIIVYLSALNSKFNTKSVA |
| 4R1D Chain:B ((1-301)) | MDKTGWITHCFGRFLIDLPPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEP------GFCIDHAYIA--GDSFQVERFGVGVTFPEHPGARFEFRSSTGAELNSLLERVDGFVQNML--STFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGYTFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALELWDTIVDSIRVRPTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203834 for 1739 contacts (-117.2/contact) +
2D Compatibility (PS) -27233 + (NN) -4293 + (LL) 1076
1D Compatibility (HY) -400 + (ID) 2200
Total energy: -236884.0 ( -136.22 by residue)
QMean score : 0.226
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