Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFIDEVKLYLKAGDGGDGCVSFRREKFVEFGGPNGGNGGKGGNIVFVSDANLNTLL-NFRYRRHVKAGSGKSG-ASRDRSGTAGKN-IVLKVPVGTQIIDEESEKIILDFNKPDMEFLIAQGGKGGLGNTNFKSSINRAPRHFTCGQFGEEKYVVLKLKVLSDVGIIGMPNAGKSKFLTRCSNADTKVGDYPFTTIKPHLG-VAKVDNSEVVI-VDIPGIITDAHLGIGLGHKFLKHVERCKILLHLID---VTHDNVVSAYNCMRNELELYNSDLVKKEEIIVLNK-C-DLLRKVEIFEKKNHLANYLNKEVLCLSI----GEDLQPILRLLNEKLKKGSSKKVDVYDPFKR |
| 1LNZ Chain:A ((2-342)) | --FVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTL-MDFRYKKHFKAIRGEHGMSKN-QHGRNADDMV-IKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDEEEL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LNZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113235 for 2560 contacts (-44.2/contact) +
2D Compatibility (PS) -34586 + (NN) -7520 + (LL) 1328
1D Compatibility (HY) -22400 + (ID) 6600
Total energy: -183013.0 ( -71.49 by residue)
QMean score : 0.388
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