Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIPEKMINLCYNSADSVSVEYSDVIVVKNLDPEQLEQYKSSSKLEFTLKFQNGKVEYKNSKVTLTIPEQLK---NCKANGKSLLGDINEHFKDTDNEVVECLVDKIADGLKSFIINPEDLNVDGSSIINKDDDAPVQILDSTEYGGTTEEQLLIQGIVNNVVGTLAGIVEVPIGMATDWVWPQDQK |
3PRB Chain:A ((170-210)) | -----------------------------------------------------VKVTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDAEKVSFVETFERK-------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PRB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7161 for 160 contacts (-44.8/contact) +
2D Compatibility (PS) -4101 + (NN) -1073 + (LL) 8432
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -7153.0 ( -44.71 by residue)
QMean score : 0.709
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