Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESINLKKYAAKIPI---LWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQP---YQHSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI
1ARZ Chain:C ((6-268))
--IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGE-LAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGE-RVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKE---SGLFDMRDVL
General information:
TITO was launched using:
RESULT:
Template:
1ARZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168340 for 2081 contacts (-80.9/contact) +
2D Compatibility (PS) -27619 + (NN) -11981 + (LL) 876
1D Compatibility (HY) -16000 + (ID) 5250
Total energy: -228314.0 ( -109.71 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1ARZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ARZ-query.scw
PDB file :
Tito_Scwrl_1ARZ.pdb
: