Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4YVJ Chain:B ((23-246))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSF--ADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ
General information:
TITO was launched using:
RESULT:
Template:
4YVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183451 for 1581 contacts (-116.0/contact) +
2D Compatibility (PS) -23814 + (NN) -7966 + (LL) 328
1D Compatibility (HY) -18400 + (ID) 4550
Total energy: -237853.0 ( -150.44 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4YVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVJ-query.scw
PDB file :
Tito_Scwrl_4YVJ.pdb
: