Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVDSHCHLIYFS-DDEIPEVISRAEQNGVKILHNICVNADDVPKLLKIASSYNQVYSSIGIHPLDASVENGKCMHADELVELIKNQKVVSIGETGLDFYKSN-NKSNQKKSFASHIEAARITGLPLVIHTRGVDSE-VIDMLKSEMKNGPFNGVMHCFTSSKELAHQSID-LGLYISFSGIITFKNASLLRRIAQDVPRERVLVETDAPYLSPEPHRGKKNEPAMVKYVVDCLAELWSASPDKVAEVTTNNFFRLFTKLKLKEIL
2GZX Chain:A ((2-254))
-LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEH--LEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEH-AE-EVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN--------
General information:
TITO was launched using:
RESULT:
Template:
2GZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146228 for 2167 contacts (-67.5/contact) +
2D Compatibility (PS) -27006 + (NN) -13425 + (LL) 1524
1D Compatibility (HY) -14800 + (ID) 4800
Total energy: -204735.0 ( -94.48 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2GZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZX-query.scw
PDB file :
Tito_Scwrl_2GZX.pdb
: