Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPFVDHKSSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVD---PKD--------FSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTP--LEPGWKGHVTLEFSNTTPLPAKIYANE--GACQFVFLSGESECEKSYDDIK-GKYMNQHGITLPLVK
1XS1 Chain:D ((34-184))
-----------------------------------------DVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPA--VRPYNRREDAKYRNQQGAVASRID
General information:
TITO was launched using:
RESULT:
Template:
1XS1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46630 for 865 contacts (-53.9/contact) +
2D Compatibility (PS) -14777 + (NN) -4170 + (LL) 2600
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -76677.0 ( -88.64 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1XS1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XS1-query.scw
PDB file :
Tito_Scwrl_1XS1.pdb
: