Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHSKPPWLRAKAPTGEIFNETLNTVKLHGLHTVCEEAACPNIGECWNKRHATVMILGSVCTRACAFCNVATGIP------NKLDPHEPENLAKAIKKLNLKYVVITSV-DRDDLPDGGASQFIKCIEEIRKITPETTVEILTPDFLNKKGAFEAIAVASPDVYNHNIEMVPRLYARIRPRARYFHSLYLLKMVKQINPKLLTKSGLMVGLGETKEEVLQVMDDLRSAE--VDFITIGQYLQ-PTPKHAKIDRYVTPEEFEHYKYIAYSKGFLVVASSPLTRSSYHAEEDFNRLKACR |
| 1R30 Chain:A ((72-252)) | -------------------------------------------------------KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHER--DMPYLEQMVQGVKAM--GLEACM-TLGTL-SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGAN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R30.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74834 for 1307 contacts (-57.3/contact) +
2D Compatibility (PS) -18665 + (NN) -10842 + (LL) 3512
1D Compatibility (HY) -4400 + (ID) 1550
Total energy: -106779.0 ( -81.70 by residue)
QMean score : 0.409
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