Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
3Q9N Chain:D ((32-116))
------------------------------------------------------------------VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI-TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG
General information:
TITO was launched using:
RESULT:
Template:
3Q9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38447 for 658 contacts (-58.4/contact) +
2D Compatibility (PS) -9199 + (NN) -5412 + (LL) 4432
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -55726.0 ( -84.69 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9N-query.scw
PDB file :
Tito_Scwrl_3Q9N.pdb
: