Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLSPHLQIYKVQVTNFFSIMHRLTGILL-------FLLLVMLSWYFTLHVYFPELFIVKCLNVLLSTFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAFLFVFI
3SFD Chain:C ((20-136))
--NRPLSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHL---ELVKSLCLGPTL-IYTAKFGIVFPLM---YHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAAM--
General information:
TITO was launched using:
RESULT:
Template:
3SFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78392 for 588 contacts (-133.3/contact) +
2D Compatibility (PS) -11251 + (NN) -5942 + (LL) 852
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -107283.0 ( -182.45 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_3SFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SFD-query.scw
PDB file :
Tito_Scwrl_3SFD.pdb
: