Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKKTRIESDSLGEVKVPSEHYWGAQTQRSLENFKIGMEKMPEPIIKALAMVKLAAARVNVKHGTIDEKVGNAICVAAKEIIDGKFNNEFPLVVWQTGSGTQTNMNINEVISNRAIEILGSNLGSKFPVHPNDHVNYGQSSNDTFPTAMHIAAAKQINHSLIPNLEVLHKALNDKVQEFKNIIKVGRTHLQDATPLTLGQEFSGYAVQIKKGIERIKSTLSNLYELAQGGTAVGTGLNTKEGFAEDFAKEVAEITNLPFTSADNKFEALAANDALVELSGTLNTVAVSLMKIASDIRLLGSGPRCGIGEITLPENEPGSSIMPGKVNPTQCEAVTMVCAQVMGNHVAVTVSGSNGHFELNVFKPVIIYNVLQSIRLLADASLNFTEKCVIGIKANEKRIKDLLNQSLMLVTILNTHIGYDNAAKIAKLAYKENITLKEAAVKLKLLTEQEFERIVKPEKFINH |
1FUP Chain:B ((5-459)) | -----RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEP----MPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FUP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195297 for 3868 contacts (-50.5/contact) +
2D Compatibility (PS) -48811 + (NN) -24781 + (LL) 456
1D Compatibility (HY) -39600 + (ID) 13200
Total energy: -321233.0 ( -83.05 by residue)
QMean score : 0.533
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