Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSI---------IVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
4P6V Chain:D ((7-208))
LKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNVRIIVQMAIIASLVIVVDQIL--KDISKQLSVFVGLIITNCIVMGRAEAFA----PIPSFIDGIGNGLGYGFVLM-TVGFFRELLGSGKLFGLEVLPNGLMLLAPSAFFLIGFMIWAIRTFKPEQVEA-
General information:
TITO was launched using:
RESULT:
Template:
4P6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84802 for 943 contacts (-89.9/contact) +
2D Compatibility (PS) -14202 + (NN) -1112 + (LL) 520
1D Compatibility (HY) -12800 + (ID) 1050
Total energy: -113446.0 ( -120.30 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_4P6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P6V-query.scw
PDB file :
Tito_Scwrl_4P6V.pdb
: