Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVQVVEAFGKPHVNVGTIGHVDHGKTTLTAAIT----KHYGNFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMPQTREHILLAKQVGVGYIVVYINKADVSDPDMIGLVEMEV-RELLSKYGFPGDEVPVVIGSALKALEDDDGEYGKKSIDKLMERLDDYVEVPPRSVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLLEGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE |
4PC6 Chain:B ((10-393)) | ---------KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG-------------KARGI----SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGD-AEWEAK-ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PC6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -187816 for 2932 contacts (-64.1/contact) +
2D Compatibility (PS) -39836 + (NN) -16022 + (LL) 2468
1D Compatibility (HY) -39600 + (ID) 13000
Total energy: -293806.0 ( -100.21 by residue)
QMean score : 0.600
|
|
|