Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKALITCFIFLVCSFTRSYASDDVHLEKSETELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHYNMDDYSSAASDMDDYIYIYPNGEDLPYVYYLRVLSYYMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEMKE--------------------------------KVRLITDHILKKEYSIGKFYFRRGEYLAAIKRFQNII-SSKDYSYFPRSINYLIAAYSALGLDLEAGQYESLLAENLKENTVEQ |
| 2Y4T Chain:A ((34-256)) | ---------------------------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQG--------KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62241 for 1432 contacts (-43.5/contact) +
2D Compatibility (PS) -20455 + (NN) -9402 + (LL) 3952
1D Compatibility (HY) 5200 + (ID) 1200
Total energy: -84146.0 ( -58.76 by residue)
QMean score : 0.443
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