Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
4JCV Chain:D ((27-215))
---SLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGM--EVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP--
General information:
TITO was launched using:
RESULT:
Template:
4JCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106028 for 1202 contacts (-88.2/contact) +
2D Compatibility (PS) -20492 + (NN) -10819 + (LL) 836
1D Compatibility (HY) -16400 + (ID) 3800
Total energy: -156703.0 ( -130.37 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4JCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JCV-query.scw
PDB file :
Tito_Scwrl_4JCV.pdb
: