Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALFKIEPAFNISLDELEKKYIELSKTDINER------QSQNMENINKAYQVLKSPLKRAEHLLNLFGVRSQEDQHNFEILNESMEIREYLLDCNNLQLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNSNF
2DN9 Chain:A ((6-73))
-SGDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG--------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6264 for 382 contacts (-16.4/contact) +
2D Compatibility (PS) -6640 + (NN) -3943 + (LL) 6596
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -14551.0 ( -38.09 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2DN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DN9-query.scw
PDB file :
Tito_Scwrl_2DN9.pdb
: