Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLP--KHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
4H2M Chain:B ((17-239))
--------GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE----------ALMELFVWALDS--EVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR------
General information:
TITO was launched using:
RESULT:
Template:
4H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135748 for 1579 contacts (-86.0/contact) +
2D Compatibility (PS) -21811 + (NN) -3769 + (LL) 1364
1D Compatibility (HY) -14000 + (ID) 4300
Total energy: -178264.0 ( -112.90 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_4H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H2M-query.scw
PDB file :
Tito_Scwrl_4H2M.pdb
: