Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWKLTKTLFIFVFILVNIVLVSIYVNKVNRSHINEVESNNEVNFQQEEIKVPASILNKSVKGIKLEQITGRSKDFSSKAKGDSDLTTSDGG----KLLNANISQSVKVSDNNLKDLKD-------YVNKR-------------VFKGSEYQ--------------------LSEINSGSVKYEQTYDNFPILNNSKAMLNFNIEDNKAASYKQSMM---DDIKPTDGADKKHQVIGVRKAI----EALYYNR-----YLKKGDEVINARLGYYSVVNETNVQLLQ-PNWEIKVKHDGKDKTNTYYVEATNNNPKIINH----------------------------------------------------------------- |
| 3TNF Chain:B ((3-381)) | ----LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDS-EELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 38697 for 1422 contacts (27.2/contact) +
2D Compatibility (PS) -26700 + (NN) 682 + (LL) 540
1D Compatibility (HY) -2400 + (ID) 2100
Total energy: 8719.0 ( 6.13 by residue)
QMean score : 0.157
|
|
|