Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ----RSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
2QMM Chain:A ((124-184))
---------------------------------------------------------------------KYSIIYLKEDGVDISNAQL-----------PPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQC----------------------
General information:
TITO was launched using:
RESULT:
Template:
2QMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28153 for 321 contacts (-87.7/contact) +
2D Compatibility (PS) -6062 + (NN) -1823 + (LL) 9300
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -31438.0 ( -97.94 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2QMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QMM-query.scw
PDB file :
Tito_Scwrl_2QMM.pdb
: