Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKDVHDLF-LNHVNSNA-VKTRKMMGEYIIYYDSVVIGGLYDNRLLVKATKS---------VRHQLQDNTLVSPYPGAKEM-----ILIPDITEAINLTNLFELI--KNDLKN
3NPD Chain:A ((1-113))
GASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSN--TGYRQLLARGAILTYSFTEYKTNQPVATERFDAGSCR-
General information:
TITO was launched using:
RESULT:
Template:
3NPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32401 for 588 contacts (-55.1/contact) +
2D Compatibility (PS) -9678 + (NN) 3558 + (LL) -128
1D Compatibility (HY) -800 + (ID) 1250
Total energy: -40699.0 ( -69.22 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_3NPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NPD-query.scw
PDB file :
Tito_Scwrl_3NPD.pdb
: