Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFIHILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKDKENKKN-----SKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK |
1PSM Chain:? ((1-38)) | ------------------------------------------------------------------------EAYKKAKQASQDAEQAAKDAENASKEAEEAAKEAVNLK------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10003 for 114 contacts (87.7/contact) +
2D Compatibility (PS) -3142 + (NN) 2270 + (LL) 11500
1D Compatibility (HY) 1600 + (ID) 500
Total energy: 21731.0 ( 190.62 by residue)
QMean score : 0.200
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