Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQ--V-SKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKM--LKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATR--PG---SMID-KLMRYINRHVYKNAENVIVLGTEMK------NYLLNHQ-ISKNADNIHVIPNWYDMRQLQDNRIYND--T-FKAYR------EQYDKILLYSGNMGQLQDMETLISFLKLNKD-Q--PQTLTILCGHGK----------KF----ADVKTAIEDHRI-ENVKMFEFLTGTDYADVL----KIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTH--SSKELHEMGERAHQLFKDKYTREINTMKYYNLLK |
| 2R60 Chain:A ((29-457)) | -------------HPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKF-LPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDG--GLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVE-DDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLA----PVEAMASGLPAVVTR--NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R60.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179806 for 2919 contacts (-61.6/contact) +
2D Compatibility (PS) -39747 + (NN) -3206 + (LL) 2156
1D Compatibility (HY) -7600 + (ID) 2750
Total energy: -230953.0 ( -79.12 by residue)
QMean score : 0.365
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