Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLI----LIVIGLIFTALGIAGAVLPLLP-----TTPFLLVAVFCFARSSDRFYNWLINQKI--YKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYM----VDVLA-----VRVGLIIMVIIQTAVLFTFV---------------------------KTLPKSNHKIEE-----------
4D0Y Chain:A ((1-184))
AEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKAMQE-AGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
General information:
TITO was launched using:
RESULT:
Template:
4D0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123581 for 763 contacts (-162.0/contact) +
2D Compatibility (PS) -12296 + (NN) 4518 + (LL) 132
1D Compatibility (HY) 400 + (ID) 1100
Total energy: -131927.0 ( -172.91 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4D0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D0Y-query.scw
PDB file :
Tito_Scwrl_4D0Y.pdb
: