Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPG-PALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGI---HMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE--
2A35 Chain:A ((4-215))
------------------------------TPKRVLLAGATGLTGEHLLDRILSEP-------TLAKVIA----------PARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGS-EEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIAGKYHGIEACDLARALWRLALEE---GKGVRFVESDELRKLGKGS
General information:
TITO was launched using:
RESULT:
Template:
2A35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -219272 for 1682 contacts (-130.4/contact) +
2D Compatibility (PS) -21277 + (NN) -208 + (LL) 6136
1D Compatibility (HY) -4000 + (ID) 1850
Total energy: -240471.0 ( -142.97 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_2A35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A35-query.scw
PDB file :
Tito_Scwrl_2A35.pdb
: