Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLI-DVFRK--NNGFIAFVRVNFYDGKDVLQPNAMISLPP-----KEGDD-YSRFHHLLDKRDDD---FVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3S2S Chain:C ((56-215))
------TAGKPAQAISKAIAQVTQKAYDNGDYIFFTIDGHDEGDDFHPETKL-FPPHNIKGTSGRDLYGALADFYQKHENDKRVFWMDKRHYSAFSGTDLDIRLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNVLGATI----------
General information:
TITO was launched using:
RESULT:
Template:
3S2S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73418 for 1006 contacts (-73.0/contact) +
2D Compatibility (PS) -15815 + (NN) -7694 + (LL) 720
1D Compatibility (HY) -10400 + (ID) 2950
Total energy: -109557.0 ( -108.90 by residue)
QMean score : 0.295
(partial model without unconserved sides chains):
PDB file :
Tito_3S2S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S2S-query.scw
PDB file :
Tito_Scwrl_3S2S.pdb
: