Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKH-EKDSRWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGIIGAYSIIF-----------PLTFKFGAENSNVIMIVASILLLFSFVVFFFIYGMVSGASALEFEKISTEGWLVVIVYAVIGIVITSVSYILSIKIFNKQEL
3F1Z Chain:A ((15-133))
-----------------------------------------------QPGDDAVASMQTYS-VAQFLQPFTLNPAKASSDYL-------GKWVKVRGVIVDIRRKS------------GIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSN----GSVATIVGQVHQVQDSTIPTLQNPKVVK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3F1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88579 for 702 contacts (-126.2/contact) +
2D Compatibility (PS) -11273 + (NN) 1868 + (LL) 11616
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -91068.0 ( -129.73 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_3F1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1Z-query.scw
PDB file :
Tito_Scwrl_3F1Z.pdb
: