Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4DWJ Chain:D ((26-228))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIH---QRFKSVNADQPLENVVEDTYQTIIKYLEK-
General information:
TITO was launched using:
RESULT:
Template:
4DWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95432 for 1603 contacts (-59.5/contact) +
2D Compatibility (PS) -22339 + (NN) -14083 + (LL) 408
1D Compatibility (HY) -28800 + (ID) 10000
Total energy: -170246.0 ( -106.20 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_4DWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DWJ-query.scw
PDB file :
Tito_Scwrl_4DWJ.pdb
: