Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHI--IIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
1PUZ Chain:A ((23-59))
--------------------------------------------------------------------------------------------------------------------------LDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLA-----------
General information:
TITO was launched using:
RESULT:
Template:
1PUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14110 for 170 contacts (-83.0/contact) +
2D Compatibility (PS) -3552 + (NN) -333 + (LL) 8140
1D Compatibility (HY) -2800 + (ID) 200
Total energy: -12855.0 ( -75.62 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1PUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PUZ-query.scw
PDB file :
Tito_Scwrl_1PUZ.pdb
: