Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGK-IVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRY--------EDLDGKKESKNDPELGKYWASL---GDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKA-QGKEIGISLLEEDKIDFAKDLL---EKHGDKIVLPVDTKVAKEFSNDAKITVVPSDS-IPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIG----VCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK |
| 2PAA Chain:B ((4-415)) | -AKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENLRFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLP-QKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSN--GCVTIIG---------------KVSHVSTGGGASLELLEGKILPGVEALSN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PAA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167515 for 3172 contacts (-52.8/contact) +
2D Compatibility (PS) -40790 + (NN) -15023 + (LL) 1152
1D Compatibility (HY) -36400 + (ID) 8850
Total energy: -267426.0 ( -84.31 by residue)
QMean score : 0.532
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